The files are stored according to the following convention:īulk density: 11 - 1.1g/cm³, 13 - 1.3g/cm³, 15 - 1. If the ITK metaimage file format is not compatible with your software toolbox, then just import the raw file directly according to the meta information stored in the mhd file. This file format can be read by any image processing software based on ITK, as well as other common software toolboxes like Fiji/ImageJ, ParaView and QuantIm. The mhd file contains important meta information and the image is stored as a binary block in the raw file. Are you working on a medical use case with ITK If so, check the data loading pipeline and try to narrow down if reading a dicom or so fails. IntensityWindowingImageFilter applies pixel-wise a linear transformation to the intensity values of input image pixels. Values over the interval are mapped to another constant. Values below this interval are mapped to a constant. The individual images are stored in the ITK metaimage format. The MetaImage errors/warning are usually raised by ITK. Applies a linear transformation to the intensity levels of the input Image that are inside a user-defined interval. Other individual grayscale images are of course available from the authors upon request.
Itk metaimage archive#
Adding the raw grayscale data for all datasets to the archive would have resulted in an excessive download time. The 'raw' folder only contains one dataset for demonstration purposes. The 'seg' folder contains the segmented data in individual subfolders for all datasets. The CT data is provided in a zip folder that contains two subfolders ('seg' and 'raw').
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